Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2294Transcriptional regulator, LysR family protein. (302 aa)    
Predicted Functional Partners:
EIO_0057
Transcriptional regulator LysR family protein.
  
     0.727
EIO_1940
LysR family transcriptional regulator.
  
     0.710
EIO_0882
Transcriptional regulator.
  
     0.635
EIO_2106
Transcriptional regulator, LysR family protein.
  
     0.608
EIO_1424
Transcriptional regulator LysR family precursor.
  
     0.580
EIO_2293
Catalase/peroxidase HPI.
     
 0.557
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.533
EIO_0090
Transcriptional regulator, LysR family, putative.
  
     0.414
EIO_2292
Conserved hypothetical protein.
       0.405
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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