Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cirAColicin I receptor. (657 aa)    
Predicted Functional Partners:
EIO_2199
C-terminal TonB protein.
 
 
 0.849
EIO_2340
Energy transducer TonB.
 
 
 0.833
EIO_2138
Possible TolA protein.
  
 
 0.788
arsC-2
Arsenate reductase.
    
 
 0.542
EIO_2296
Hypothetical protein.
       0.512
EIO_0717
ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit.
 
  
 0.484
EIO_0719
Periplasmic binding protein.
 
  
 0.474
EIO_0720
TonB-dependent receptor.
 
  
0.453
EIO_2777
Heme acquisition protein hasR.
  
   
 0.448
EIO_0716
ABC cobalamin/Fe3+-siderophore transporter, ATPase subunit.
 
  
 0.440
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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