Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2349Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein. (429 aa)    
Predicted Functional Partners:
EIO_2350
Branched-chain amino acid ABC transporter, permease protein.
 
 
 0.997
EIO_2351
Branched-chain amino acid ABC transporter, permease protein.
 
 
 0.995
EIO_2352
Branched-chain amino acid ABC transporter, ATP-binding protein, putative.
 
 
 0.995
EIO_2353
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
 
 0.993
ureE
Urease accessory protein UreE.
 
   
 0.757
EIO_1920
Inner-membrane translocator.
  
 
 0.669
ureD
Urease accessory protein UreD.
 
   
 0.621
EIO_0198
Monooxygenase, FAD-binding protein.
   
  
 0.620
EIO_2118
Monooxygenase.
   
  
 0.620
EIO_1349
Branched-chain amino acid ABC transporter, permease protein.
  
 
 0.615
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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