Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
recFRecombination protein F. (370 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR.
 
 
 0.948
EIO_2386
DNA polymerase III, beta subunit.
 
  
 0.944
dnaA
Chromosomal replication initiation protein.
 
  
 0.920
gyrB
DNA gyrase, B subunit.
  
 0.813
recO
DNA repair protein RecO.
  
 
 
 0.800
EIO_2032
DNA polymerase III subunit beta.
 
  
 0.691
pheT
phenylalanyl-tRNA synthetase, beta subunit.
 
  
 0.686
EIO_1781
DNA topoisomerase I.
  
   
 0.619
EIO_0848
DnaA-like protein.
 
  
 0.615
EIO_2548
Ribonuclease P protein component.
 
  
 0.614
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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