Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2389formamidopyrimidine-DNA glycosylase. (286 aa)    
Predicted Functional Partners:
rpsT
Ribosomal protein S20.
     0.813
uvrC
Excinuclease ABC, C subunit.
  
 
 0.789
EIO_2757
dephospho-CoA kinase.
  
  
 0.754
ubiE
Ubiquinone biosynthesis methyltransferase Coq5, precursor.
     
 0.713
EIO_2391
2-polyprenylphenol 6-hydroxylase.
       0.708
pheT
phenylalanyl-tRNA synthetase, beta subunit.
  
  
 0.503
uvrA
Excinuclease ABC subunit A.
  
  
 0.499
ruvA
Holliday junction DNA helicase motor protein.
    
 0.495
dinB
DNA polymerase IV.
 
   
 0.492
recF
Recombination protein F.
     
 0.491
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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