Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_2432Glutamate synthase. (479 aa)    
Predicted Functional Partners:
EIO_2430
Glutamine-pyruvate aminotransferase.
 0.999
nuoF
NADH dehydrogenase I subunit F.
 
 
 0.990
EIO_0752
Glutamine synthetase family protein.
  
 
 0.922
EIO_0754
Glutamine synthetase family protein.
  
 
 0.922
EIO_2253
Glutamine synthetase class-I.
  
 
 0.922
EIO_0828
Ferredoxin.
    
 0.920
glmS
Glucosamine--fructose-6-phosphate aminotransferase.
    
 0.920
amt-2
Aromatic amino acid aminotransferase.
 
  
 0.919
carB
Carbamoyl-phosphate synthase large subunit.
  
 
 0.919
EIO_1187
Aspartate aminotransferase.
  
 
 0.908
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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