Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2523TRAP dicarboxylate transporter, DctM subunit. (436 aa)    
Predicted Functional Partners:
EIO_2521
Putative signal peptide protein.
 
 
 0.995
EIO_2522
Conserved hypothetical protein.
 
 0.900
EIO_1811
Conserved hypothetical protein.
 
 0.847
EIO_1809
2,3-diketo-L-gulonate-binding periplasmic protein.
 
 
 0.833
EIO_0030
C4-dicarboxylate-binding periplasmic protein.
 
 
 0.827
EIO_0034
C4-dicarboxylate-binding periplasmic protein.
 
 
 0.826
EIO_2713
TRAP family transporter, periplasmic substrate binding subunit.
 
 
 0.813
EIO_2524
LamB/YcsF family protein.
       0.775
EIO_2525
Conserved hypothetical protein.
  
  
 0.738
EIO_2520
Carveol dehydrogenase.
    
  0.637
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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