Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2544Regulatory protein ada. (358 aa)    
Predicted Functional Partners:
EIO_2056
4Fe-4S ferredoxin, iron-sulfur cluster binding protein.
      0.935
EIO_1655
DNA-3-methyladenine glycosylase II, putative.
 
  
 0.887
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 
 0.831
EIO_0099
ADA regulatory protein.
 
  
0.801
rpoH
Alternative sigma factor RpoH.
   
 
 0.784
rpoD
RNA polymerase sigma factor.
   
 
 0.784
dinB
DNA polymerase IV.
 
  
 0.640
recA
Recombinase A.
  
  
 0.617
EIO_1954
Putative 3-methyladenine DNA glycosylase.
  
  
 0.583
EIO_0447
Conserved hypothetical protein.
  
  
 0.573
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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