STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2549Conserved hypothetical protein. (93 aa)    
Predicted Functional Partners:
EIO_2548
Ribonuclease P protein component.
  
  
 0.983
oxaA
Inner membrane protein oxaA, putative.
  
  
 0.926
EIO_2550
tRNA 2-thiocytidine biosynthesis protein.
       0.845
EIO_2547
Ribosomal protein L34.
  
  
 0.825
secE
Preprotein translocase, SecE subunit.
   
    0.781
EIO_1366
seryl-tRNA synthetase.
  
    0.770
rho
Transcription termination factor Rho.
  
    0.719
EIO_2554
GTP-binding protein HSR1-related protein.
  
    0.657
EIO_0139
Conserved hypothetical protein.
  
    0.605
EIO_0492
Methyltransferase, putative.
  
    0.605
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.