Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2569Transcriptional regulator. (170 aa)    
Predicted Functional Partners:
EIO_2568
N-acyl-L-homoserine lactone synthetase-like protein.
 
  
 0.936
EIO_0910
Conserved hypothetical protein.
  
     0.765
EIO_0367
Possible flagellar switch protein FliM.
 
   
 0.703
EIO_0619
Conserved hypothetical protein.
  
     0.671
EIO_2163
Conserved hypothetical protein.
  
     0.602
EIO_1643
ABC polyamine transporter, periplasmic substrate-binding protein.
  
   
 0.598
EIO_0476
Conserved hypothetical protein.
  
     0.592
rplQ
Ribosomal protein L17.
       0.521
EIO_0770
Conserved hypothetical protein.
  
     0.513
EIO_2567
ATPase, AAA family protein.
       0.503
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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