Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2572DNA-directed RNA polymerase alpha subunit. (338 aa)    
Predicted Functional Partners:
rpsK
30S ribosomal protein S11.
 
 0.999
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 0.999
rpoB
DNA-directed RNA polymerase, beta subunit.
 
 0.999
rpsD
Ribosomal protein S4.
 
 0.998
rpsM
Ribosomal protein S13p/S18e.
 
 0.998
rpoZ
DNA-directed RNA polymerase omega subunit.
 
 0.997
rpsE
30S ribosomal protein S5.
 
 0.996
rpsH
Ribosomal protein S8.
 
 
 0.995
rpsC
30S ribosomal protein S3.
 
 
 0.995
rplQ
Ribosomal protein L17.
 
 0.994
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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