STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsE30S ribosomal protein S5. (187 aa)    
Predicted Functional Partners:
rpsD
Ribosomal protein S4.
 
 0.999
rpsB
30S ribosomal protein S2.
 
 0.999
rpsI
30S ribosomal protein S9.
 
 0.999
rpsK
30S ribosomal protein S11.
 0.999
rpsM
Ribosomal protein S13p/S18e.
 0.999
secY
Preprotein translocase SecY.
 0.999
rplO
Ribosomal protein L15.
 
 0.999
rpmD
Ribosomal protein L30.
  
 0.999
rplR
50S ribosomal protein L18.
 
 0.999
rplF
50S ribosomal protein L6.
 0.999
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.