Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rplXRibosomal protein L24. (101 aa)    
Predicted Functional Partners:
EIO_2584
Ribosomal protein L5.
 
 0.999
rpmD
Ribosomal protein L30.
 
 0.998
rplR
50S ribosomal protein L18.
 
 0.998
rplF
50S ribosomal protein L6.
  
 0.998
rpsH
Ribosomal protein S8.
  
 
 0.998
rpsN
Ribosomal protein S14.
  
 
 0.998
EIO_2586
50S ribosomal protein L14.
  
 0.998
rpoC
DNA-directed RNA polymerase, beta' subunit.
  
 
 0.998
rpsE
30S ribosomal protein S5.
 
 
 0.997
rplO
Ribosomal protein L15.
 
 0.996
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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