Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_258650S ribosomal protein L14. (88 aa)    
Predicted Functional Partners:
rpsK
30S ribosomal protein S11.
 
 0.999
rpsE
30S ribosomal protein S5.
 
 0.999
rplR
50S ribosomal protein L18.
 
 0.999
rplF
50S ribosomal protein L6.
 
 0.999
rpsH
Ribosomal protein S8.
 
 0.999
rpsN
Ribosomal protein S14.
  
 0.999
EIO_2584
Ribosomal protein L5.
 
 0.999
rpsQ
Ribosomal protein S17.
 
 0.999
rplP
50S ribosomal protein L16.
 0.999
rpsC
30S ribosomal protein S3.
 0.999
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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