Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2597Elongation factor Tu. (391 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 0.993
EIO_2599
30S ribosomal protein S7.
 
 0.989
EIO_2600
30S ribosomal protein S12.
  
 0.988
tsf
Translation elongation factor Ts.
   
 0.982
rplL
Ribosomal protein L7/L12.
 
 0.979
rplA
50S ribosomal protein L1.
 
 0.977
rpsK
30S ribosomal protein S11.
  
 0.976
rplO
Ribosomal protein L15.
  
 0.976
rpsE
30S ribosomal protein S5.
  
 0.976
rplP
50S ribosomal protein L16.
  
 0.976
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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