Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_259930S ribosomal protein S7. (156 aa)    
Predicted Functional Partners:
rpsE
30S ribosomal protein S5.
 
 0.999
rplP
50S ribosomal protein L16.
 
 0.999
rpsC
30S ribosomal protein S3.
 
 0.999
EIO_2595
30S ribosomal protein S10.
 
 0.999
EIO_2598
Elongation factor G.
 0.999
EIO_2600
30S ribosomal protein S12.
 0.999
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 
 0.999
rpsD
Ribosomal protein S4.
 
 0.998
rpsB
30S ribosomal protein S2.
 
 0.998
rpsK
30S ribosomal protein S11.
 
 0.998
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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