Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ugpBGlycerol-3-phosphate-binding periplasmic protein precursor ugpB. (440 aa)    
Predicted Functional Partners:
ugpAc
Sn-glycerol-3-phosphate ABC transporter, permease protein.
 
 0.996
EIO_2662
Putative permease component of ABC transporter.
 
  0.993
EIO_2661
ATP-binding protein, ABC-type glycerol-3-phosphate transporter.
  
  0.988
EIO_1678
Putative permease, YjgP/YjgQ family.
  
  
  0.813
EIO_0518
ABC transporter related protein.
  
  0.807
EIO_1042
ABC transporter related protein.
  
  0.807
EIO_1867
ABC transporter related protein.
  
  0.807
EIO_1902
ABC transporter related protein.
  
  0.807
EIO_1935
Sugar ABC transporter.
  
  0.807
EIO_2083
ATP-binding transport protein smoK.
  
  0.807
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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