Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2673Oligopeptide ABC transporter (permease). (305 aa)    
Predicted Functional Partners:
EIO_2674
Oligopeptide ABC transporter (permease).
 
  0.951
EIO_2672
Oligopeptide ABC transporter substrate-binding protein.
 
   0.889
EIO_0739
Binding-protein-dependent transport systems inner membrane component.
 
  0.855
EIO_1949
Binding-protein-dependent transport systems inner membrane component.
  
  0.846
EIO_1519
Binding-protein-dependent transport systems inner membrane component.
  
  0.845
EIO_1439
Binding-protein-dependent transport systems inner membrane component.
 
  0.843
EIO_0294
Probable dipeptide transport system permease protein.
 
  0.839
EIO_1495
Dipeptide ABC transporter.
  
  0.836
EIO_0783
Peptide ABC transporter permease.
 
  0.833
EIO_1976
Binding-protein-dependent transport systems inner membrane component.
 
  0.822
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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