STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsB3-deoxy-manno-octulosonate cytidylyltransferase. (266 aa)    
Predicted Functional Partners:
EIO_1730
RNA polymerase sigma factor.
 
  
 0.974
EIO_1858
KpsF/GutQ family protein.
 
   
 0.920
EIO_2809
three-deoxy-D-manno-octulosonic-acid transferase-like protein.
    
 0.912
EIO_0108
2-dehydro-3-deoxyphosphooctonate aldolase.
 
   
 0.902
EIO_2701
3'-phosphadenosine 5'-phosphosulfate 3'-phosphatase.
       0.845
lpxK
Tetraacyldisaccharide 4'-kinase.
 
   
 0.830
EIO_1075
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase.
 
   
 0.820
EIO_1561
acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine O-acyltransferase.
 
   
 0.808
EIO_1559
lipid-A-disaccharide synthase.
 
   
 0.805
EIO_0382
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase.
 
   
 0.801
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.