Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rumA23S rRNA (Uracil-5-)-methyltransferase rumA. (399 aa)    
Predicted Functional Partners:
EIO_2733
polyA polymerase family protein.
  
  
 0.868
hslO
Chaperonin HslO.
 
     0.805
EIO_2731
ErfK/YbiS/YcfS/YnhG family protein.
       0.653
EIO_2377
Ribosomal RNA small subunit methyltransferase B, putative.
  
  
 0.569
EIO_1015
tRNA (guanine-N(7)-)-methyltransferase.
  
 
 0.547
EIO_2735
NUDIX hydrolase.
       0.546
guaA
GMP synthase.
  
  
 0.542
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
   
 
 0.511
EIO_2261
Beta-hexosamidase.
 
     0.495
EIO_0607
RelA/SpoT family protein.
   
 0.455
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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