Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
regAPhotosynthetic apparatus regulatory protein RegA. (183 aa)    
Predicted Functional Partners:
EIO_2772
Sensor histidine kinase RegB.
 
 0.996
EIO_2039
Conserved hypothetical protein.
  
     0.655
regM
Periplasmic sensor signal transduction histidine kinase.
 
 
 0.616
EIO_2823
Two component transcriptional regulator, winged helix family protein.
  
 
 0.594
EIO_1557
Conserved hypothetical protein.
  
     0.561
EIO_0323
Electron transport protein SCO1/SenC.
  
  
 0.528
EIO_1335
SCO1/2 family protein.
  
  
 0.528
EIO_2771
Sensor protein divL.
 
  
 0.514
fnrL
Transcriptional activator protein FnrL.
   
  
 0.455
EIO_1198
5-aminolevulinate synthase.
      
 0.455
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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