Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2789Twin-arginine translocation pathway signal. (197 aa)    
Predicted Functional Partners:
lolE
Lipoprotein releasing system transmembrane protein LolE.
 
 
 
 0.891
EIO_2787
Cell division protein FtsK/SpoIIIE.
 
  
 0.857
EIO_1680
Organic solvent tolerance protein, putative.
  
   
 0.815
EIO_2786
Aminotransferase, classes I and II.
     
 0.809
EIO_0670
Conserved hypothetical protein.
   
 
 0.775
lolD
ABC lipoprotein efflux transporter, ATPase subunit, LolD.
   
 
 0.775
amiC
Probable N-acetylmuramoyl-L-alanine amidase.
    
   0.775
EIO_1645
Conserved hypothetical protein.
  
     0.711
EIO_2788
FtsK/SpoIIIE family protein.
  
  
 0.613
EIO_2769
Exonuclease-like protein.
 
     0.611
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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