Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hspQHeat shock protein hspQ. (108 aa)    
Predicted Functional Partners:
EIO_2792
GAF domain protein.
       0.735
EIO_2793
NAD-dependent epimerase/dehydratase.
       0.732
EIO_0475
Conserved hypothetical protein.
 
     0.682
EIO_2790
Conserved hypothetical protein.
       0.609
EIO_1552
Conserved hypothetical protein.
  
   
 0.564
EIO_2794
ABC transporter related protein.
       0.543
EIO_2795
Extracellular solute-binding protein.
       0.530
EIO_2796
Binding-protein-dependent transport systems inner membrane component.
       0.478
EIO_2797
Putative ICC protein.
       0.478
EIO_2041
Conserved hypothetical protein.
  
     0.466
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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