STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2811Conserved hypothetical protein. (509 aa)    
Predicted Functional Partners:
EIO_0854
Rhomboid family protein.
 
    0.756
sdhD
Succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.751
EIO_1779
Conserved hypothetical protein.
    
 0.749
EIO_2810
PmbA.
       0.732
EIO_2808
3-deoxy-D-manno-octulosonic-acid.
 
     0.728
EIO_0951
Conserved domain protein.
  
     0.726
EIO_2735
NUDIX hydrolase.
  
     0.713
EIO_0904
D-alanyl-D-alanine carboxypeptidase family.
  
    0.701
EIO_2150
SlyX protein, putative.
  
     0.701
EIO_2620
Conserved hypothetical protein.
  
     0.694
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.