Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbcBCytochrome b. (190 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit.
 
 0.999
EIO_2830
Ubiquinol--cytochrome c reductase, cytochrome c1.
 0.999
EIO_0772
Cytochrome c oxidase, subunit III.
 
 0.997
EIO_2828
Ubiquinol--cytochrome c reductase, cytochrome B.
     0.994
EIO_2269
NADH dehydrogenase subunit M.
 
 0.992
EIO_2445
Cytochrome c oxidase, aa3-type, subunit I.
 
 0.985
ctaC
Cytochrome c oxidase, subunit II.
 
 0.983
EIO_2275
Respiratory-chain NADH dehydrogenase, subunit 1.
  
 0.974
EIO_0686
Cytochrome-c oxidase.
  
 0.973
qoxB
QoxB, quinol oxidase subunit II.
 
 0.961
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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