Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_2840Chaperone protein DnaJ. (381 aa)    
Predicted Functional Partners:
EIO_2841
Chaperone protein DnaK.
 0.999
groEL
Chaperonin GroEL.
 
 0.986
grpE
GrpE protein HSP-70 cofactor, putative.
 
 
 0.978
EIO_0707
Conserved hypothetical protein.
  
 0.977
EIO_0692
RNA polymerase, sigma 32 subunit, RpoH.
  
 0.935
EIO_0818
Tetratricopeptide TPR_2 repeat protein.
    
 0.928
ndk
Nucleoside diphosphate kinase.
    
 0.923
hslU
Heat shock protein HslVU, ATPase subunit HslU.
   
 
 0.923
EIO_2599
30S ribosomal protein S7.
   
 0.921
EIO_2227
Morn repeat protein.
    
 0.919
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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