Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zapEType I secretion target repeat protein. (336 aa)    
Predicted Functional Partners:
EIO_0131
Hemolysin-type calcium-binding region.
 
 0.845
EIO_2507
Hemolysin-type calcium-binding region.
 
 0.808
EIO_2117
Hemolysin-type calcium-binding region.
 
 0.784
EIO_0135
Hemolysin-type calcium-binding region.
 
 0.715
EIO_2516
Alkaline phosphatase.
 
    
 0.610
EIO_0140
Hemolysin-type calcium-binding region.
 
 0.564
truB
tRNA pseudouridine synthase B.
       0.533
EIO_1534
Conserved hypothetical protein.
 
     0.481
rpsO
Ribosomal protein S15.
       0.479
EIO_0345
Type I secretion target repeat protein.
 
 0.463
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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