Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpsORibosomal protein S15. (89 aa)    
Predicted Functional Partners:
rpsR
Ribosomal protein S18.
   
 0.998
rpsI
30S ribosomal protein S9.
 
 0.998
rpsQ
Ribosomal protein S17.
  
 0.998
rpsP
Ribosomal protein S16.
  
 0.997
rpsD
Ribosomal protein S4.
 
 0.997
rpsF
30S ribosomal protein S6.
   
 0.997
rpsB
30S ribosomal protein S2.
  
 0.997
rplM
Ribosomal protein L13.
 
 0.997
rpsT
Ribosomal protein S20.
  
 0.997
rpsM
Ribosomal protein S13p/S18e.
  
 0.997
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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