STRINGSTRING
DVU_0005 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0005" - annotation not available in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0005annotation not available (261 aa)    
Predicted Functional Partners:
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (856 aa)
              0.886
dnaN
DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663 (384 aa)
 
      0.803
DVU_2077
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA3501; match to protein family HMM PF03130 (642 aa)
 
      0.800
DVU_2937
TPR domain protein/response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00515 (451 aa)
   
 
 
  0.800
DVU_0858
annotation not available (227 aa)
   
 
      0.799
DVU_0311
Flagellar assembly protein FliH, putative; Identified by similarity to SP-P31068 (250 aa)
 
   
  0.785
DVU_2211
Uncharacterized protein; Identified by Glimmer2; putative (872 aa)
   
          0.784
DVU_0518
Uncharacterized protein; Identified by Glimmer2; putative (154 aa)
   
          0.784
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515 (1076 aa)
   
          0.783
DVU_1032
Uncharacterized protein; Identified by Glimmer2; putative (169 aa)
   
          0.783
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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