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DVU_0040 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0040" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
Databases
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[Homology]
Score
DVU_0040Uncharacterized protein; Identified by Glimmer2; putative (204 aa)    
Predicted Functional Partners:
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593 (649 aa)
   
          0.545
DVU_2382
Conserved domain protein; Identified by similarity to GP-29340940 (454 aa)
   
          0.484
DVU_2381
Uncharacterized protein; Identified by similarity to GP-29340941 (222 aa)
   
          0.484
DVU_0039
C4-type zinc finger protein, DksA/TraR family; Identified by match to protein family HMM PF01258 (176 aa)
              0.483
DVU_0372
annotation not available (230 aa)
   
          0.433
DVU_0475
annotation not available (146 aa)
   
          0.428
DVU_1240
Uncharacterized protein; Identified by Glimmer2; putative (135 aa)
   
          0.413
DVU_2554
Uncharacterized protein; Identified by similarity to OMNI-NTL01FN0863 (294 aa)
   
          0.406
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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