STRINGSTRING
motA-1 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"motA-1" - Chemotaxis protein MotA in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
motA-1Chemotaxis protein MotA; Identified by similarity to SP-P28611; match to protein family HMM PF01618 (252 aa)    
Predicted Functional Partners:
DVU_0049
OmpA family protein; Identified by similarity to SP-O07887; match to protein family HMM PF00691 (364 aa)
 
 
  0.996
DVU_0048
Chemotaxis protein MotB; Identified by similarity to SP-O07887; match to protein family HMM PF00691 (246 aa)
 
 
  0.994
pomB
Chemotaxis protein PomB; Identified by similarity to GP-2130949; match to protein family HMM PF00691 (257 aa)
 
  0.980
DVU_2228
MotB protein, putative; Identified by similarity to GP-4426946; match to protein family HMM PF00691 (244 aa)
 
  0.972
fliN
Flagellar motor switch protein FliN; Identified by similarity to SP-P15070; match to protein family HMM PF01052 (170 aa)
 
   
  0.947
DVU_2609
Chemotaxis MotB protein, putative; Identified by similarity to GP-4426946; match to protein family HMM PF00691 (243 aa)
 
 
  0.935
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system (235 aa)
 
   
  0.913
DVU_0047
Flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis (171 aa)
 
   
  0.885
fliQ
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis (89 aa)
 
   
  0.834
DVU_0449
Protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR (1513 aa)
   
   
  0.828
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]