STRINGSTRING
DVU_0059 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0059" - Identified by match to protein family HMM PF00873 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0059Identified by match to protein family HMM PF00873 (1236 aa)    
Predicted Functional Partners:
DVU_0058
Efflux transporter, RND family, MFP subunit; Identified by similarity to OMNI-CC1787; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (383 aa)
 
 
  0.974
DVU_0060
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP-P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (394 aa)
 
 
  0.867
DVU_0057
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440 (213 aa)
         
  0.854
DVU_0437
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP-P76397; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (486 aa)
 
 
  0.810
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP-Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845 (504 aa)
 
 
  0.807
DVU_3247
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP-1707644; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (389 aa)
 
 
  0.777
DVU_2817
Multidrug resistance protein; Identified by similarity to SP-P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (417 aa)
 
 
  0.700
DVU_3097
Outer membrane efflux protein; Identified by match to protein family HMM PF02321 (439 aa)
 
 
  0.660
DVU_2439
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP-P75830; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (411 aa)
 
 
  0.636
DVU_0061
Efflux pump membrane transporter; Identified by similarity to GP-18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915 (1046 aa)
 
       
0.618
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]