STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0063Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (146 aa)    
Predicted Functional Partners:
DVU_0062
RND efflux system, outer membrane protein, NodT family; Identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
  
 0.739
DVU_0061
Multidrug resistance protein, putative; Identified by similarity to GP:18496807; match to protein family HMM PF00873; match to protein family HMM TIGR00915.
  
  
 0.694
DVU_0060
Efflux transporter, RND family, MFP subunit; Identified by similarity to SP:P31223; match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.674
DVU_0064
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.564
DVU_0525
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.518
DVU_1386
Membrane protein, putative.
  
   
 0.478
DVU_0125
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.440
DVU_0058
Efflux transporter, RND family, MFP subunit; Identified by similarity to OMNI:CC1787; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.425
DVU_0059
Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.424
DVU_0057
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
  
 0.420
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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