STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0076Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (334 aa)    
Predicted Functional Partners:
DVU_0117
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.783
DVU_0552
Conserved hypothetical protein; Identified by similarity to GP:14250952; match to protein family HMM PF00535.
  
     0.774
DVU_0075
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.691
DVU_0327
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
  
 0.629
DVU_0074
Polysaccharide biosynthesis domain protein; Identified by similarity to SP:P39631.
 
  
 0.606
DVU_0072
Glucose-1-phosphate cytidylyl-transferase; Identified by similarity to SP:P26396; match to protein family HMM PF00483.
 
 
 0.551
DVU_0281
Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.
  
 0.535
DVU_3140
Capsular polysaccharide transport protein, putative; Identified by similarity to GP:2801417; match to protein family HMM PF02563.
 
  
 0.516
DVU_0073
CDP-glucose-4,6-dehydratase, putative; Identified by similarity to GP:1197641.
 
  
 0.494
DVU_0342
Identified by match to protein family HMM PF01370.
 
  
 0.486
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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