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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0079ZIP zinc transporter family protein; Identified by similarity to SP:Q06916; match to protein family HMM PF02535. (267 aa)    
Predicted Functional Partners:
mntP
Membrane protein, putative; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
    
 0.915
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.824
sodB
Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.666
DVU_2932
Conserved hypothetical protein TIGR01777; Identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777.
  
    0.637
DVU_0102
Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297.
  
  
 0.632
DVU_0099
TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
     
 0.601
DVU_0567
Identified by match to protein family HMM PF03741.
  
  
 0.598
DVU_0525
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
  
 0.594
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
      
 0.586
DVU_2751
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.558
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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