STRINGSTRING
DVU_0089 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0089" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0089Uncharacterized protein; Identified by similarity to OMNI-VCA0583 (267 aa)    
Predicted Functional Partners:
DVU_2662
Uncharacterized protein; Identified by similarity to SP-P54952 (254 aa)
   
          0.725
DVU_2409
Bacterial extracellular solute-binding proteins, family 3; Identified by match to protein family HMM PF00497 (270 aa)
   
          0.689
DVU_1562
HAMP domain protein; Identified by match to protein family HMM PF00672 (964 aa)
 
 
  0.665
DVU_0852
annotation not available (265 aa)
   
          0.620
DVU_1388
Uncharacterized protein; Identified by similarity to OMNI-SO1143 (251 aa)
   
          0.579
DVU_0722
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966 (518 aa)
 
   
  0.573
DVU_3039
Uncharacterized protein; Identified by similarity to GP-9949385 (241 aa)
   
          0.479
DVU_0636
Response regulator/GGDEF domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254 (437 aa)
 
 
 
  0.418
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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