STRINGSTRING
DVU_0093 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_0093" - Conserved domain protein/glycosyl transferase, group 1 family protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0093Conserved domain protein/glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF02231 (816 aa)    
Predicted Functional Partners:
DVU_0038
Acyltransferase domain protein; Identified by match to protein family HMM PF01553 (616 aa)
   
 
  0.659
DVU_0742
Uncharacterized protein; Identified by Glimmer2; putative (278 aa)
   
          0.617
DVU_0938
annotation not available (122 aa)
   
 
  0.605
DVU_0697
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family (472 aa)
 
   
  0.596
DVU_0400
Uncharacterized protein; Identified by Glimmer2; putative (183 aa)
   
          0.594
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily (640 aa)
     
 
  0.546
DVU_0755
Sensor histidine kinase, putative; Identified by match to protein family HMM PF02518 (455 aa)
   
        0.544
DVU_0134
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (345 aa)
 
   
  0.535
DVU_3013
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (568 aa)
 
 
  0.522
DVU_0094
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF00672 (720 aa)
   
        0.501
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (13%) [HD]