STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0099TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (386 aa)    
Predicted Functional Partners:
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
 
 
 0.940
DVU_2389
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.873
DVU_3100
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
 0.869
DVU_2383
tonB dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
 
 0.867
DVU_2807
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.843
tolQ-2
tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
 
 
 0.828
DVU_2806
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
 
 0.822
tolQ-1
tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
 
 
 0.821
DVU_0102
Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297.
  
  
 0.704
tolB
tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.644
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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