STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0102Cation ABC transporter, periplasmic binding protein; Identified by match to protein family HMM PF01297. (330 aa)    
Predicted Functional Partners:
DVU_0104
Cation ABC transporter, permease protein, putative; Identified by similarity to SP:P44661; match to protein family HMM PF00950.
 
 
 0.995
DVU_0103
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:NTL02SC0434; match to protein family HMM PF00005.
 
 
 0.982
DVU_1342
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005.
 
 
 0.959
DVU_1341
Cation ABC transporter, permease protein; Identified by similarity to GP:5019735; match to protein family HMM PF00950.
 
 
 0.951
DVU_1343
Cation ABC transporter, periplasmc-binding protein; Identified by match to protein family HMM PF01297.
  
  
  0.916
DVU_0100
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
 
  
 0.822
DVU_2491
ABC transporter, ATP-binding protein; Identified by similarity to SP:P31060; match to protein family HMM PF00005.
  
  
 0.778
DVU_2805
Cobalamin synthesis protein/P47K family; Identified by match to protein family HMM PF02492.
  
  
 0.705
DVU_0099
TonB domain protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  
 0.704
DVU_0949
Conserved domain protein; Identified by similarity to OMNI:NMB1475.
  
  
 0.665
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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