Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0119Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (554 aa)    
Predicted Functional Partners:
DVU_0118
Sigma-54 dependent transcriptional regulator/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 
 0.870
DVU_0120
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.
 
    0.856
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.768
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
    0.764
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.754
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.743
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.743
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.732
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.723
phoB
Phosphate regulon transcriptional regulator PhoB; Identified by similarity to SP:P23620; match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 
 0.720
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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