Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0127Membrane protein, putative; Identified by similarity to SP:P75774. (370 aa)    
Predicted Functional Partners:
DVU_0125
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.984
DVU_2380
ABC transporter, ATP-binding protein; Identified by similarity to SP:P72335; match to protein family HMM PF00005.
 
  
 0.949
DVU_0126
ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.
 
  
0.931
DVU_3161
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
    
 0.905
DVU_1342
Cation ABC transporter, ATP-binding protein, putative; Identified by similarity to SP:Q9XDA6; match to protein family HMM PF00005.
 
    0.904
DVU_1627
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:DR2134; match to protein family HMM PF00005.
      0.904
livG
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005.
 
      0.900
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
      0.897
DVU_2343
Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
      0.895
DVU_0611
ABC transporter, ATP-binding protein; Identified by similarity to GP:21109946; match to protein family HMM PF00005.
      0.892
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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