Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0133Hypothetical protein; Identified by Glimmer2; putative. (240 aa)    
Predicted Functional Partners:
DVU_0132
Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.
 
  
 0.985
DVU_3299
Membrane protein, putative; Identified by match to protein family HMM PF01925.
 
     0.788
DVU_0149
Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.
 
     0.780
DVU_3237
Phosphoenolpyruvate synthase-related protein; Identified by similarity to SP:P23538; match to protein family HMM PF00391.
 
     0.756
DVU_3214
Phosphoenolpyruvate synthase-related protein; Identified by similarity to SP:P42850; match to protein family HMM PF00391; match to protein family HMM PF01326.
 
    0.725
DVU_0251
Membrane protein, putative; Identified by similarity to OMNI:AF2125; match to protein family HMM PF01925.
 
     0.701
DVU_0480
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.687
DVU_0305
Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037.
  
     0.678
DVU_0250
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.674
DVU_3216
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.648
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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