DVU_0134 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0117	DVU_0134	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.414
DVU_0117	DVU_0552	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Conserved hypothetical protein; Identified by similarity to GP:14250952; match to protein family HMM PF00535.	0.786
DVU_0117	DVU_2354	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.662
DVU_0117	DVU_2993	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 1/2 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.471
DVU_0117	DVU_2994	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.769
DVU_0134	DVU_0117	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.414
DVU_0134	DVU_0135	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00924; Belongs to the TtcA family.	0.594
DVU_0134	DVU_0281	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	0.418
DVU_0134	DVU_0327	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	0.411
DVU_0134	DVU_0552	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Conserved hypothetical protein; Identified by similarity to GP:14250952; match to protein family HMM PF00535.	0.767
DVU_0134	DVU_0697	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.425
DVU_0134	DVU_2354	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.425
DVU_0134	DVU_2993	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 1/2 family protein; Identified by match to protein family HMM PF00534; match to protein family HMM PF00535.	0.417
DVU_0134	DVU_2994	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.742
DVU_0134	DVU_3140	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Capsular polysaccharide transport protein, putative; Identified by similarity to GP:2801417; match to protein family HMM PF02563.	0.400
DVU_0135	DVU_0134	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00924; Belongs to the TtcA family.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.594
DVU_0281	DVU_0134	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.418
DVU_0281	DVU_0552	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	Conserved hypothetical protein; Identified by similarity to GP:14250952; match to protein family HMM PF00535.	0.504
DVU_0281	DVU_0697	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.903
DVU_0281	DVU_2354	Exopolysaccharide biosynthesis protein, putative; Identified by match to protein family HMM PF02397.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.489

page 1 of 4

Server load: low (14%) [HD]

Share

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About