Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
DVU_0139Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518. (570 aa)    
Predicted Functional Partners:
DVU_0140
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.894
DVU_2963
Response regulator; Identified by match to protein family HMM PF00072.
     0.815
DVU_3215
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.805
DVU_3238
Response regulator; Identified by match to protein family HMM PF00072.
 
 0.787
DVU_2966
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.786
DVU_0581
Response regulator/anti-anti-sigma factor; Identified by match to protein family HMM PF00072.
 
    0.744
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
  
    0.735
DVU_0271
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
  
     0.712
DVU_0482
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.697
DVU_2964
Hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.674
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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