Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_0150Membrane protein, putative. (98 aa)    
Predicted Functional Partners:
DVU_0148
Lipoprotein, putative.
  
  
 0.967
DVU_0149
Membrane protein, putative; Identified by similarity to OMNI:NTL01HSA00048; match to protein family HMM PF01925.
  
  
 0.940
DVU_0146
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.883
DVU_0145
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 0.835
DVU_0147
Lipoprotein, putative.
  
    0.796
DVU_0533
Hmc operon protein 4; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates.
   
  
 0.715
DVU_0151
HAMP domain/sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158; match to protein family HMM PF00672.
  
  
 0.490
DVU_1109
ATPase domain protein; Identified by match to protein family HMM PF00991.
      
 0.430
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.424
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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