STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0155Identified by match to protein family HMM PF01663. (462 aa)    
Predicted Functional Partners:
DVU_0156
ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580.
  
    0.801
thiL
Thiamin-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
  
    0.789
DVU_0158
Conserved hypothetical protein TIGR00104; Identified by match to protein family HMM PF00596; match to protein family HMM PF01980; match to protein family HMM TIGR00104.
 
    0.774
DVU_1438
Cobyrinic acid a,c-diamide synthase family protein; Identified by match to protein family HMM PF01656.
  
     0.682
DVU_0584
Transposase, putative; Identified by similarity to OMNI:NTL01NM00438.
  
     0.681
DVU_3031
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01HS00726.
  
     0.675
DVU_2555
MATE efflux family protein; Identified by similarity to OMNI:NTL01RSA1213; match to protein family HMM PF01554; match to protein family HMM TIGR00797.
 
     0.654
DVU_1650
Conserved hypothetical protein; Identified by similarity to SP:P45576.
  
     0.583
DVU_1600
Adenylate cyclase; Identified by match to protein family HMM PF01928.
  
     0.565
DVU_1566
Phosphoadenosine phosphosulfate reductase, putative; Identified by match to protein family HMM PF01507.
 
   
 0.533
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.