Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_0189Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613. (561 aa)    
Predicted Functional Partners:
DVU_0197
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
  
 0.811
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
 
    0.800
DVU_2185
Terminase, large subunit, putative.
 
    0.789
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
 
    0.788
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
 
    0.776
DVU_2171
Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
  
 0.774
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
   
    0.774
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.766
DVU_2872
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.
 
  
 0.761
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.757
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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