DVU_0189 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DVU_0189

Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613. (561 aa)

Predicted Functional Partners:

DVU_0197

0.809

DVU_0191

0.800

DVU_2185

0.781

DVU_0194

0.780

DVU_2851

0.774

DVU_2876

0.774

DVU_0192

0.771

DVU_2171

0.765

DVU_2878

0.762

DVU_2872

0.751

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0189	DVU_0191	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	0.800
DVU_0189	DVU_0192	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.771
DVU_0189	DVU_0194	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Terminase, large subunit, putative; Identified by similarity to GP:6723224.	0.780
DVU_0189	DVU_0197	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.809
DVU_0189	DVU_2171	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.765
DVU_0189	DVU_2185	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Terminase, large subunit, putative.	0.781
DVU_0189	DVU_2851	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Tail protein, putative; Identified by similarity to GP:19483757.	0.774
DVU_0189	DVU_2872	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.751
DVU_0189	DVU_2876	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Terminase, large subunit, putative; Identified by similarity to GP:13361094.	0.774
DVU_0189	DVU_2878	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.762
DVU_0191	DVU_0189	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.800
DVU_0191	DVU_0192	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	0.870
DVU_0191	DVU_0194	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Terminase, large subunit, putative; Identified by similarity to GP:6723224.	0.880
DVU_0191	DVU_0197	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.584
DVU_0191	DVU_2171	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Portal protein; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.461
DVU_0191	DVU_2185	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Terminase, large subunit, putative.	0.773
DVU_0191	DVU_2851	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Tail protein, putative; Identified by similarity to GP:19483757.	0.685
DVU_0191	DVU_2872	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Phage portal protein, lambda family; Identified by match to protein family HMM PF05136; match to protein family HMM TIGR01539.	0.439
DVU_0191	DVU_2876	Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.	Terminase, large subunit, putative; Identified by similarity to GP:13361094.	0.783
DVU_0192	DVU_0189	Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.	Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.	0.771

page 1 of 5

Server load: low (38%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About