Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_0191Conserved hypothetical protein; Identified by similarity to OMNI:CC3049. (519 aa)    
Predicted Functional Partners:
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
    0.867
DVU_2881
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.859
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
 
    0.850
DVU_2592
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.802
DVU_0189
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.800
DVU_2591
Tail fiber assembly protein, putative.
   
    0.759
DVU_0214
tail/DNA circulation protein, putative; Identified by similarity to GP:19483753.
   
    0.737
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
  
    0.726
DVU_2185
Terminase, large subunit, putative.
  
    0.722
DVU_2879
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
   
0.686
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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