Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_0192Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family. (452 aa)    
Predicted Functional Partners:
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
  
 0.945
DVU_2881
Phage-plasmid primase, P4 family; Identified by match to protein family HMM PF03288; match to protein family HMM TIGR01613.
 
    0.907
DVU_0193
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.906
DVU_0195
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.893
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
0.870
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
    0.867
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
 
  
 0.854
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
  
 0.853
DVU_1503
Terminase, large subunit; Identified by match to protein family HMM PF03354.
 
    0.835
DVU_2851
Tail protein, putative; Identified by similarity to GP:19483757.
   
    0.823
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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