STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_0193Hypothetical protein; Identified by Glimmer2; putative. (243 aa)    
Predicted Functional Partners:
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.900
DVU_0195
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.899
DVU_0194
Terminase, large subunit, putative; Identified by similarity to GP:6723224.
  
  
 0.890
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
   
  
 0.589
DVU_2714
Conserved hypothetical protein; Identified by similarity to GP:6900380.
   
  
 0.589
DVU_2715
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1103.
   
  
 0.589
DVU_2716
Tail sheath protein, putative; Identified by similarity to SP:P79678.
   
  
 0.577
DVU_2710
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM01727.
   
  
 0.576
DVU_2713
Conserved hypothetical protein.
   
  
 0.576
DVU_2712
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.565
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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